PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_12499_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 222aa    MW: 24244.8 Da    PI: 5.1588
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_12499_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08105126325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     +++C+ +   G C yG++C+F+H
  Neem_12499_f_1 105 EKICKSYVT-GSCTYGSKCRFIH 126
                     578999999.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.521102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6102127IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4102128IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6105126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7106127IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAKRRSGSGS LSPLMRKYLT SNSNSNSSSN SSSPLSRMSS NCNSPLSAVD EEYVFVMDGI  60
LVSNDDFCRS SEEFGNSRFG TKSQLAYGKD ELRSTRPIGK NKSEEKICKS YVTGSCTYGS  120
KCRFIHQDQI MTDSALVLNT AKMDSEGSVN TSKNSNTFKP ELNGEDNWSP EDDGIEVTLP  180
TKPPGTNSPA SREEANESIE NVLYGPTAAK KRLPVFTEIC PE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006493280.13e-51PREDICTED: tristetraprolin-like isoform X1
TrEMBLA0A067EZX94e-38A0A067EZX9_CITSI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15770815